Stem-loop cgr-mir-300

Accession

MI0020481

Description

Cricetulus griseus cgr-mir-300 precursor miRNA

Sequence

6683 reads, 80 reads per million, 6 experiments

uaucguuugcuacuugaagagagguuauccuuuguguguuugcuuuacgcgaaaugaaUAUGCAAGGGCAAGCUCUCUUCgaggagcaaa
.....((((((.(((((((((((.((..((((((((((((((.(((....))).)))))))))))))).)).))))))))))).))))))

Structure

uaucg      a           g  au              c   a 
     uuugcu cuugaagagag uu  ccuuuguguguuug uuu c
     |||||| ||||||||||| ||  |||||||||||||| |||  
     aaacga gagCUUCUCUC AA  GGGAACGUAUaagu aag g
-----      g           G  -C              a   c 

Annotation confidence Not enough data

Genome context

JH000884.1: 52952-53041 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-300

Mature cgr-miR-300

• Accession: MIMAT0023889
• Description: Cricetulus griseus cgr-miR-300 mature miRNA
• Sequence: 59 - UAUGCAAGGGCAAGCUCUCUUC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75