Stem-loop cgr-let-7b

Accession

MI0020369

Description

Cricetulus griseus cgr-let-7b precursor miRNA

Literature search

3 open access papers mention cgr-let-7b
(3 sentences)

Sequence

7471869 reads, 16760.0 reads per million, 55 experiments

accgcagggUGAGGUAGUAGGUUGUGUGGUUucagggcagugauguugccccuuagaagauaaCUAUACAACCUACUGCCUUCCcugaggggcccaggga
.((.(((((.(((((((((((((((((((((((.((((((.....)))))).......)).)))))))))))))))))))))))))).))..........

Structure

---------a  g     U                     -  ------a      u 
          cc caggg GAGGUAGUAGGUUGUGUGGUU uc       gggcag g
          || ||||| ||||||||||||||||||||| ||       |||||| a
          gg gucCC UUCCGUCAUCCAACAUAUCaa ag       cccguu u
agggacccgg  a     -                     u  aagauuc      g 

Annotation confidence High

Genome context

JH002598.1: 107133-107232 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-let-7b

Mature cgr-let-7b-5p

• Accession: MIMAT0023717
• Description: Cricetulus griseus cgr-let-7b-5p mature miRNA
• Sequence: 10 - UGAGGUAGUAGGUUGUGUGGUU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-let-7b-3p

• Accession: MIMAT0052426
• Description: Cricetulus griseus cgr-let-7b-3p mature miRNA
• Sequence: 64 - CUAUACAACCUACUGCCUUCC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75