Stem-loop cgr-mir-1260

Accession

MI0020388

Description

Cricetulus griseus cgr-mir-1260 precursor miRNA

Sequence

8312 reads, 116 reads per million, 6 experiments

acuugggaaAUCCCACCGCUGCCACCAaauaaagugaaacacaguaaauggggaucgcuauggagucaaagcaaguuuga
(((((......((((..((.(((.(((..((..(((...)))..))..))))).).))..))).)......)))))....

Structure

----     ggaaAU -   CC  U -  A   aa  aa   a 
    acuug      C CCA  GC G CC CCA  ua  gug  
    |||||      | |||  || | || |||  ||  ||| a
    ugaac      g ggu  cg u gg ggu  au  cac  
aguu     gaaacu a   au  c a  -   aa  ga   a 

Annotation confidence Low

Genome context

JH000033.1: 3309782-3309861 [+]

Mature cgr-miR-1260

• Accession: MIMAT0023746
• Description: Cricetulus griseus cgr-miR-1260 mature miRNA
• Sequence: 10 - AUCCCACCGCUGCCACCA - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75