Stem-loop cgr-mir-350

Accession

MI0020508

Description

Cricetulus griseus cgr-mir-350 precursor miRNA

Sequence

10352 reads, 116 reads per million, 6 experiments

uacaagaguAAAGUGCAUGCGCUUUGGGACAgugaggaaaauagugUUCACAAAGCCCAUACACUUUCACccuuuaggag
...(((.((((((((.(((.(((((((((((.((.......)).))))).)))))).))).)))))).)).)))......

Structure

---uac   a  -      C   C      -     g  ag 
      aag gu AAAGUG AUG GCUUUG GGACA ug  g
      ||| || |||||| ||| |||||| ||||| ||  a
      uuc CA UUUCAC UAC CGAAAC CUUgu au  a
gaggau   c  C      A   C      A     g  aa 

Annotation confidence Low

Genome context

JH000177.1: 67260-67339 [+]

Mature cgr-miR-350-5p

• Accession: MIMAT0023931
• Description: Cricetulus griseus cgr-miR-350-5p mature miRNA
• Sequence: 10 - AAAGUGCAUGCGCUUUGGGACA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-350-3p

• Accession: MIMAT0023932
• Description: Cricetulus griseus cgr-miR-350-3p mature miRNA
• Sequence: 47 - UUCACAAAGCCCAUACACUUUCAC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75