Stem-loop cgr-mir-146a

Accession

MI0020407

Description

Cricetulus griseus cgr-mir-146a precursor miRNA

Literature search

4 open access papers mention cgr-mir-146a
(5 sentences)

Sequence

380074 reads, 899.0 reads per million, 55 experiments

ccucagcucUGAGAACUGAAUUCCAUGGGUUgugucaaugucaGACCUGUGAAGUUCAGUUCUUCagcugggauagcucu
.(((((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).)))))))........

Structure

-------c       cU            C        g  uc 
        cucagcu  GAGAACUGAAUU CAUGGGUU ug  a
        |||||||  |||||||||||| |||||||| ||  a
        gggucga  UUCUUGACUUGA GUGUCCAG ac  u
ucucgaua       -C            A        -  ug 

Annotation confidence Medium

Genome context

JH000303.1: 1014971-1015050 [+]

Mature cgr-miR-146a-5p

• Accession: MIMAT0023774
• Description: Cricetulus griseus cgr-miR-146a-5p mature miRNA
• Sequence: 10 - UGAGAACUGAAUUCCAUGGGUU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-146a-3p

• Accession: MIMAT0052437
• Description: Cricetulus griseus cgr-miR-146a-3p mature miRNA
• Sequence: 44 - GACCUGUGAAGUUCAGUUCUUC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75