Stem-loop cgr-mir-15a

Accession

MI0020416

Description

Cricetulus griseus cgr-mir-15a precursor miRNA

Literature search

2 open access papers mention cgr-mir-15a
(5 sentences)

Sequence

52577 reads, 732 reads per million, 6 experiments

ggaguaaagUAGCAGCACAUAAUGGUUUGUGGAuuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaaauacaagg
........(..((((((((..((((((((((.............))))))))))..))))))))..)...........

Structure

---ggaguaaa UA        UA          GAuuu 
           g  GCAGCACA  AUGGUUUGUG     u
           |  ||||||||  ||||||||||     g
           C  CGUCGUGU  UACCGGACgu     a
ggaacauaaaA UC        UA          ggaaa 

Annotation confidence High

Genome context

JH000694.1: 802850-802927 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-15a

Mature cgr-miR-15a-5p

• Accession: MIMAT0023789
• Description: Cricetulus griseus cgr-miR-15a-5p mature miRNA
• Sequence: 10 - UAGCAGCACAUAAUGGUUUGUGGA - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-15a-3p

• Accession: MIMAT0023790
• Description: Cricetulus griseus cgr-miR-15a-3p mature miRNA
• Sequence: 47 - CAGGCCAUAUUGUGCUGCCUCA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75