Stem-loop cgr-mir-501

Accession

MI0020535

Description

Cricetulus griseus cgr-mir-501 precursor miRNA

Sequence

11594 reads, 94.0 reads per million, 20 experiments

cauccucucuAAUCCUUUGUCCCUGGGUGGAAAugcuauuuguaugcaaUGCACCCGGGCAAGGAUUUGGagaagguga
((((.(((((((..(((((.(((.(((((.(..(((.........))).).)))))))))))))..))))))).)))).

Structure

-    c       UC     U   U     G AA   uau 
 cauc ucucuAA  CUUUG CCC GGGUG A  ugc   u
 |||| |||||||  ||||| ||| ||||| |  |||   u
 gugg agaGGUU  GGAAC GGG CCCAC U  acg   g
a    a       UA     -   -     G -a   uau 

Annotation confidence High

Genome context

Unknown

Mature cgr-miR-501-5p

• Accession: MIMAT0023975
• Description: Cricetulus griseus cgr-miR-501-5p mature miRNA
• Sequence: 11 - AAUCCUUUGUCCCUGGGUGGAAA - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-501-3p

• Accession: MIMAT0023976
• Description: Cricetulus griseus cgr-miR-501-3p mature miRNA
• Sequence: 50 - UGCACCCGGGCAAGGAUUUGG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75