Stem-loop cgr-mir-1343

Accession

MI0020398

Description

Cricetulus griseus cgr-mir-1343 precursor miRNA

Sequence

4301 reads, 20.0 reads per million, 53 experiments

aaugcugcuggcuucggugcCGGGGAGCGGCUCCCGGGCAGGccucugcucuggcccCUCCUGGGGCCCGCACUCUCGCUccgggcccgc
......((.((((.(((.((.((((.((((.(((((((..((((........))))...))))))).)))).)))).)).))))))).))

Structure

aaugcu  u    u   u  C    A    C       -CA    ucu 
      gc ggcu cgg gc GGGG GCGG UCCCGGG   GGcc   g
      || |||| ||| || |||| |||| |||||||   ||||    
      cg ccgg gcc CG UCUC CGCC GGGGUCC   ccgg   c
------  c    -   U  C    A    C       UCc    ucu 

Annotation confidence High

Genome context

JH000070.1: 1730781-1730870 [+]

Mature cgr-miR-1343-5p

• Accession: MIMAT0052433
• Description: Cricetulus griseus cgr-miR-1343-5p mature miRNA
• Sequence: 21 - CGGGGAGCGGCUCCCGGGCAGG - 42
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-1343-3p

• Accession: MIMAT0023761
• Description: Cricetulus griseus cgr-miR-1343-3p mature miRNA
• Sequence: 58 - CUCCUGGGGCCCGCACUCUCGCU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75