Stem-loop cgr-mir-379

Accession

MI0020516

Description

Cricetulus griseus cgr-mir-379 precursor miRNA

Sequence

12735 reads, 75.0 reads per million, 21 experiments

cugaagagaUGGUAGACUAUGGAACGUAGGcguuauguuuuugaccUAUGUAACAUGGUCCACUAACucucaguauccaa
((((.(((.((((.(((((((..(((((((((.........)).)))))))..))))))).)))).))))))).......

Structure

-------    a   a    A       GA       -  uua 
       cuga gag UGGU GACUAUG  ACGUAGG cg   u
       |||| ||| |||| |||||||  ||||||| ||   g
       gacu cuC AUCA CUGGUAC  UGUAUcc gu   u
aaccuau    -   A    C       AA       a  uuu 

Annotation confidence High

Genome context

JH000884.1: 36528-36607 [+]

Mature cgr-miR-379-5p

• Accession: MIMAT0023945
• Description: Cricetulus griseus cgr-miR-379-5p mature miRNA
• Sequence: 10 - UGGUAGACUAUGGAACGUAGG - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-379-3p

• Accession: MIMAT0052471
• Description: Cricetulus griseus cgr-miR-379-3p mature miRNA
• Sequence: 47 - UAUGUAACAUGGUCCACUAAC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75