miRBase entry: cgr-mir-628

Stem-loop cgr-mir-628


Accession
MI0020544
Description
Cricetulus griseus cgr-mir-628 precursor miRNA


Sequence

7530 reads, 116 reads per million, 6 experiments
ucgcuuccucAUGCUGACAUAUUUACUAGAGGguaaaaucaacagacuucugguaagaguggcagucgaagggaagggcucaccugacuucaggaacccg
.(.((((((...((((.(((.(((((((((((..............))))))))))).))).))))....)))))).)....((((....))))......

Structure
---------------------u g      -cAU    A   A           guaaaa 
                      c cuuccu    GCUG CAU UUUACUAGAGG      u
                      | ||||||    |||| ||| |||||||||||       
                      g gaaggg    ugac gug gaauggucuuc      c
gcccaaggacuucaguccacuc g      aagc    g   a           agacaa 


Annotation confidence Not enough data
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Genome context
JH000003.1: 3400307-3400406 [-]

Database links

Mature cgr-miR-628

Accession MIMAT0023989
Description Cricetulus griseus cgr-miR-628 mature miRNA
Sequence 11 - AUGCUGACAUAUUUACUAGAGG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75