Stem-loop cgr-mir-1956

Accession

MI0020443

Description

Cricetulus griseus cgr-mir-1956 precursor miRNA

Sequence

228 reads, 1.0 reads per million, 35 experiments

ccugaccuucAGUCCAGGGCUGAGUCAGCGGAgccccgaguggcuucccuggcuggcaCCUGGACGUAGGCUAUUUCCGU
.....(((...((((((((((.((((((.((((((......)))))).))))))))).)))))))..)))..........

Structure

-----ccuga   ucA       -   G      C      cc 
          ccu   GUCCAGG GCU AGUCAG GGAgcc  g
          |||   ||||||| ||| |||||| ||||||   
          GGA   CAGGUCC cgg ucgguc cuucgg  a
UGCCUUUAUC   -UG       a   -      c      ug 

Annotation confidence Not enough data

Genome context

JH003015.1: 90919-90998 [-]

Mature cgr-miR-1956-5p

• Accession: MIMAT0023830
• Description: Cricetulus griseus cgr-miR-1956-5p mature miRNA
• Sequence: 11 - AGUCCAGGGCUGAGUCAGCGGA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-1956-3p

• Accession: MIMAT0052445
• Description: Cricetulus griseus cgr-miR-1956-3p mature miRNA
• Sequence: 59 - CCUGGACGUAGGCUAUUUCCGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75