Stem-loop mmu-mir-149

Accession

MI0000171

Symbol

MGI: Mir149

Description

Mus musculus mmu-mir-149 precursor miRNA mir-149

Gene
family

RF00829; mir-149

Literature search

30 open access papers mention mmu-mir-149
(324 sentences)

Sequence

52597 reads, 150 reads per million, 85 experiments

ggcUCUGGCUCCGUGUCUUCACUCCCguguuuguccgaggaggGAGGGAGGGACGGGGGCGGUGCu
(((.(((.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).))).)))

Structure

   U   G      G     A     g g  u 
ggc CUG CUCCGU UCUUC CUCCC u uu g
||| ||| |||||| ||||| ||||| | || u
uCG GGC GGGGCA GGAGG GAGgg g ag c
   U   G      G     -     a g  c 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

chr1: 92850378-92850443 [+]

Mature mmu-miR-149-5p

• Accession: MIMAT0000159
• Description: Mus musculus mmu-miR-149-5p mature miRNA
• Sequence: 4 - UCUGGCUCCGUGUCUUCACUCCC - 26
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

Mature mmu-miR-149-3p

• Accession: MIMAT0016990
• Description: Mus musculus mmu-miR-149-3p mature miRNA
• Sequence: 44 - GAGGGAGGGACGGGGGCGGUGC - 65
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009