Stem-loop cgr-mir-23b

Accession

MI0020467

Description

Cricetulus griseus cgr-mir-23b precursor miRNA

Literature search

1 open access papers mention cgr-mir-23b
(3 sentences)

Sequence

12876 reads, 167 reads per million, 6 experiments

cuggcugcuuGGGUUCCUGGCAUGCUGAUUugugacuugagauuaaaAUCACAUUGCCAGGGAUUACCacgcaacca
.(((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).)))

Structure

c   c   u   --          -  C      gugacu 
 ugg ugc uGG  GUUCCUGGCA UG UGAUUu      u
 ||| ||| |||  |||||||||| || ||||||       
 acc acg aCC  UAGGGACCGU AC ACUAaa      g
-   a   c   AU          U  -      auuaga 

Annotation confidence Low

Genome context

JH002734.1: 36660-36736 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cgr-mir-23b

Mature cgr-miR-23b-5p

• Accession: MIMAT0023864
• Description: Cricetulus griseus cgr-miR-23b-5p mature miRNA
• Sequence: 11 - GGGUUCCUGGCAUGCUGAUU - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-23b-3p

• Accession: MIMAT0023865
• Description: Cricetulus griseus cgr-miR-23b-3p mature miRNA
• Sequence: 48 - AUCACAUUGCCAGGGAUUACC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75