Stem-loop cgr-mir-708

Accession

MI0020553

Description

Cricetulus griseus cgr-mir-708 precursor miRNA

Literature search

1 open access papers mention cgr-mir-708
(1 sentences)

Sequence

83851 reads, 451.0 reads per million, 39 experiments

gacugcccucAAGGAGCUUACAAUCUAGCUGGggguaaaugacuugcacuugaacaCAACUAGACUGUGAGCUUCUAGAgggcaggggccuuacccuagu
..((((((((.(((((((((((.(((((.((.(..(((.((.....)).)))..).)).))))).))))))))))).))))))))(((.....)))....

Structure

-------------ga        A           A     C  G gg   a  a 
               cugcccuc AGGAGCUUACA UCUAG UG g  uaa ug c
               |||||||| ||||||||||| ||||| || |  ||| || u
               gacgggAG UCUUCGAGUGU AGAUC AC c  guu ac u
ugaucccauuccggg        A           C     A  a aa   c  g 

Annotation confidence High

Genome context

JH001544.1: 78521-78620 [-]

Mature cgr-miR-708-5p

• Accession: MIMAT0024001
• Description: Cricetulus griseus cgr-miR-708-5p mature miRNA
• Sequence: 11 - AAGGAGCUUACAAUCUAGCUGG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-708-3p

• Accession: MIMAT0052482
• Description: Cricetulus griseus cgr-miR-708-3p mature miRNA
• Sequence: 57 - CAACUAGACUGUGAGCUUCUAGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75