miRBase entry: cgr-mir-182

Stem-loop cgr-mir-182


Accession
MI0020424
Description
Cricetulus griseus cgr-mir-182 precursor miRNA


Sequence

10603 reads, 104 reads per million, 6 experiments
ucccacccuuUUUGGCAAUGGUAGAACUCACACCggugagguacugggacccggugguucuagacuugccaacuaugguguaagugcugagcugcugaag
..........(((((((....(((.(((.((((((((..((((((((((((....))))))))...)))).)))..))))).))).)))...))))))).

Structure
ucccacccuu       AUGG   A   C     --   ga    ---        c 
          UUUGGCA    UAG ACU ACACC  ggu  ggua   cugggacc g
          |||||||    ||| ||| |||||  |||  ||||   ||||||||  
          aagucgu    guc uga ugugg  uca  ccgu   gaucuugg g
---------g       -cga   g   a     ua   -a    uca        u 


Annotation confidence Low
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Genome context
JH000073.1: 2318803-2318902 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-182

Accession MIMAT0023805
Description Cricetulus griseus cgr-miR-182 mature miRNA
Sequence 11 - UUUGGCAAUGGUAGAACUCACACC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75