Stem-loop cgr-mir-221

Accession

MI0020464

Description

Cricetulus griseus cgr-mir-221 precursor miRNA

Literature search

2 open access papers mention cgr-mir-221
(7 sentences)

Sequence

121295 reads, 1687 reads per million, 6 experiments

ggggcaugaACCUGGCAUACAAUGUAGAUUUCUGUguuuauuaggcaacAGCUACAUUGUCUGCUGGGUUUCaggcuaccug
(((((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))).))..

Structure

--  -   a    -       U         AUUU    -    a 
  gg ggc ugaA CCUGGCA ACAAUGUAG    CUGU guuu  
  || ||| |||| ||||||| |||||||||    |||| |||| u
  cc ucg aCUU GGGUCGU UGUUACAUC    GAca cgga  
gu  a   g    U       C         ----    a    u 

Annotation confidence High

Genome context

JH000515.1: 1085312-1085393 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-221

Mature cgr-miR-221-5p

• Accession: MIMAT0023858
• Description: Cricetulus griseus cgr-miR-221-5p mature miRNA
• Sequence: 10 - ACCUGGCAUACAAUGUAGAUUUCUGU - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-221-3p

• Accession: MIMAT0023859
• Description: Cricetulus griseus cgr-miR-221-3p mature miRNA
• Sequence: 50 - AGCUACAUUGUCUGCUGGGUUUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75