Stem-loop cgr-mir-301a

Accession

MI0020482

Description

Cricetulus griseus cgr-mir-301a precursor miRNA

Sequence

4303 reads, 42 reads per million, 6 experiments

gcucgcgaauGCUCUGACUUUAUUGCACUACUguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCauccgaaag
..(((.((.((((.((((.((((((((((.((((........)).)).))))))))))....)))).)))))))))...

Structure

-gc   c  a    C    ---U          A  -  acu 
   ucg ga uGCU UGAC    UUAUUGCACU CU gu   u
   ||| || |||| ||||    |||||||||| || ||    
   agc cu aCGA ACUG    GAUAACGUGA ga cg   u
gaa   -  -    A    UUAU          C  u  aca 

Annotation confidence Low

Genome context

JH000425.1: 767045-767123 [-]

Mature cgr-miR-301a-5p

• Accession: MIMAT0023890
• Description: Cricetulus griseus cgr-miR-301a-5p mature miRNA
• Sequence: 11 - GCUCUGACUUUAUUGCACUACU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-301a-3p

• Accession: MIMAT0023891
• Description: Cricetulus griseus cgr-miR-301a-3p mature miRNA
• Sequence: 48 - CAGUGCAAUAGUAUUGUCAAAGC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75