Stem-loop cgr-mir-17

Accession

MI0020419

Description

Cricetulus griseus cgr-mir-17 precursor miRNA

Literature search

3 open access papers mention cgr-mir-17
(37 sentences)

Sequence

279378 reads, 3908 reads per million, 6 experiments

aggauaauguCAAAGUGCUUACAGUGCAGGUAGugauaugcacaucuACUGCAGUGCAGGCACUUGUGGcauuauggu
...(((((((((((((((((.((.(((((.(((((.......)).)))))))).)).)))))))).)))))))))...

Structure

agg         -        A  G     G   -  au 
   auaauguCA AAGUGCUU CA UGCAG UAG ug  a
   ||||||||| |||||||| || ||||| ||| ||  u
   uauuacGGU UUCACGGA GU ACGUC Auc ac  g
ugg         G        C  G     -   u  ac 

Annotation confidence High

Genome context

JH001979.1: 109700-109777 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cgr-mir-17

Mature cgr-miR-17-5p

• Accession: MIMAT0023795
• Description: Cricetulus griseus cgr-miR-17-5p mature miRNA
• Sequence: 11 - CAAAGUGCUUACAGUGCAGGUAG - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-17-3p

• Accession: MIMAT0023796
• Description: Cricetulus griseus cgr-miR-17-3p mature miRNA
• Sequence: 48 - ACUGCAGUGCAGGCACUUGUGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75