Stem-loop cgr-mir-1271

Accession

MI0020389

Description

Cricetulus griseus cgr-mir-1271 precursor miRNA

Sequence

95928 reads, 754.0 reads per million, 55 experiments

cacccagaucagugCUUGGCACCUGGUAAGCACUCaguaaauauuugaugAGUGCCUGCUGUGUGCCAAGGcauugugcu
.....((..(((((((((((((.(((((.(((((((.(((....))).))))))).))))).))))))).))))))..))

Structure

caccc  au      -       C     A       g   a 
     ag  cagugC UUGGCAC UGGUA GCACUCa uaa u
     ||  |||||| ||||||| ||||| ||||||| |||  
     uc  guuacG AACCGUG GUCGU CGUGAgu guu a
-----  gu      G       U     C       a   u 

Annotation confidence High

Genome context

JH000102.1: 1664392-1664471 [-]

Mature cgr-miR-1271-5p

• Accession: MIMAT0061409
• Description: Cricetulus griseus cgr-miR-1271-5p mature miRNA
• Sequence: 15 - CUUGGCACCUGGUAAGCACUC - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-1271-3p

• Accession: MIMAT0023747
• Description: Cricetulus griseus cgr-miR-1271-3p mature miRNA
• Sequence: 51 - AGUGCCUGCUGUGUGCCAAGG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75