Stem-loop cgr-mir-505

Accession

MI0020538

Description

Cricetulus griseus cgr-mir-505 precursor miRNA

Sequence

9205 reads, 128 reads per million, 6 experiments

cacccaguggGGGAGCCAGGAAGUAUUGAUGUUucugccaguuuagcGUCAACACUUGCUGGUUUCCUCUcuggaguau
.((((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))..

Structure

-c  -    u           G    A        ucug 
  ac ccag ggGGGAGCCAG AAGU UUGAUGUU    c
  || |||| ||||||||||| |||| ||||||||    c
  ug gguc CUCCUUUGGUC UUCA AACUGcga    a
ua  a    U           G    C        uuug 

Annotation confidence Low

Genome context

JH000262.1: 1570368-1570446 [-]

Mature cgr-miR-505-5p

• Accession: MIMAT0023979
• Description: Cricetulus griseus cgr-miR-505-5p mature miRNA
• Sequence: 11 - GGGAGCCAGGAAGUAUUGAUGUU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-505-3p

• Accession: MIMAT0023980
• Description: Cricetulus griseus cgr-miR-505-3p mature miRNA
• Sequence: 48 - GUCAACACUUGCUGGUUUCCUCU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75