Stem-loop cgr-mir-328

Accession

MI0020496

Description

Cricetulus griseus cgr-mir-328 precursor miRNA

Literature search

2 open access papers mention cgr-mir-328
(3 sentences)

Sequence

44481 reads, 163.0 reads per million, 55 experiments

ccuggagcgGGGGGGCAGGAGGGGCUCAGGGagaaagugucuacagcccCUGGCCCUCUCUGCCCUUCCGUccccugacu
...((.(((((((((((((.(((((.((((((((.....))).....)))))))))).))))))))))))).))......

Structure

---ccu  a             A     U     -----   a 
      gg gcgGGGGGGCAGG GGGGC CAGGG     aga a
      || ||||||||||||| ||||| |||||     ||| g
      cc UGCCUUCCCGUCU UCCCG GUCcc     ucu u
ucaguc  c             C     -     cgaca   g 

Annotation confidence High

Genome context

JH000973.1: 241883-241962 [-]

Mature cgr-miR-328-5p

• Accession: MIMAT0052463
• Description: Cricetulus griseus cgr-miR-328-5p mature miRNA
• Sequence: 10 - GGGGGGCAGGAGGGGCUCAGGG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-328-3p

• Accession: MIMAT0023914
• Description: Cricetulus griseus cgr-miR-328-3p mature miRNA
• Sequence: 50 - CUGGCCCUCUCUGCCCUUCCGU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75