Stem-loop cgr-mir-199b

Accession

MI0020449

Description

Cricetulus griseus cgr-mir-199b precursor miRNA

Sequence

37551 reads, 117.0 reads per million, 37 experiments

cuuccgaucuCCCAGUGUUUAGACUACCUGUUCaggacucccaaauuguACAGUAGCCUGCACAUUGGUUAGAgaucgga
..((((((((((((((((.(((.((((.(((.(((..........))).))))))).))).)))))))...)))))))))

Structure

cu         ---       U   A    C   U   gacu 
  uccgaucuC   CCAGUGU UAG CUAC UGU Cag    c
  |||||||||   ||||||| ||| |||| ||| |||     
  aggcuagAG   GGUUACA GUC GAUG ACA guu    c
--         AUU       C   C    -   u   aaac 

Annotation confidence High

Genome context

Unknown

Mature cgr-miR-199b-5p

• Accession: MIMAT0023838
• Description: Cricetulus griseus cgr-miR-199b-5p mature miRNA
• Sequence: 11 - CCCAGUGUUUAGACUACCUGUUC - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-199b-3p

• Accession: MIMAT0052448
• Description: Cricetulus griseus cgr-miR-199b-3p mature miRNA
• Sequence: 50 - ACAGUAGCCUGCACAUUGGUUAGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75