Stem-loop cgr-mir-222

Accession

MI0020465

Description

Cricetulus griseus cgr-mir-222 precursor miRNA

Literature search

2 open access papers mention cgr-mir-222
(5 sentences)

Sequence

54575 reads, 759 reads per million, 6 experiments

cucaguggcUCAGUAGCCAGUGUAGAUCCUGuccuugguaaucagcAGCUACAUCUGGCUACUGGGUCUCUgguggcauca
.((((.(((((((((((((((((((...(((...........)))...))))).)))))))))))))).))))........

Structure

-------c    u              -     AUC   uccu 
        ucag ggcUCAGUAGCCAG UGUAG   CUG    u
        |||| |||||||||||||| |||||   |||    g
        ggUC CUGGGUCAUCGGUC ACAUC   gac    g
acuacggu    U              U     GAc   uaau 

Annotation confidence Low

Genome context

JH000515.1: 1084728-1084808 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-222

Mature cgr-miR-222-5p

• Accession: MIMAT0023860
• Description: Cricetulus griseus cgr-miR-222-5p mature miRNA
• Sequence: 10 - UCAGUAGCCAGUGUAGAUCCUG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-222-3p

• Accession: MIMAT0023861
• Description: Cricetulus griseus cgr-miR-222-3p mature miRNA
• Sequence: 47 - AGCUACAUCUGGCUACUGGGUCUCU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75