Stem-loop cgr-mir-503

Accession

MI0020536

Description

Cricetulus griseus cgr-mir-503 precursor miRNA

Sequence

649760 reads, 3981.0 reads per million, 55 experiments

gucgugcccUAGCAGCGUCCAAAACAGUACUGCaguauuugguaagcuggAGUAUUGUUUCCGCUGCUCGGguaagucug
(.(.(((((.(((((((....((((((((((.((((.........)))).)))))))))).))))))).))))).).)..

Structure

-- u g     U       UCCA          G    auu 
  g c ugccc AGCAGCG    AAACAGUACU Cagu   u
  | | ||||| |||||||    |||||||||| ||||   g
  c g augGG UCGUCGC    UUUGUUAUGA gucg   g
gu u a     C       ---C          g    aau 

Annotation confidence High

Genome context

JH000353.1: 1175314-1175393 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cgr-mir-503

Mature cgr-miR-503-5p

• Accession: MIMAT0052477
• Description: Cricetulus griseus cgr-miR-503-5p mature miRNA
• Sequence: 10 - UAGCAGCGUCCAAAACAGUACUGC - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-503-3p

• Accession: MIMAT0023977
• Description: Cricetulus griseus cgr-miR-503-3p mature miRNA
• Sequence: 51 - AGUAUUGUUUCCGCUGCUCGG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75