Stem-loop cgr-mir-132

Accession

MI0020396

Description

Cricetulus griseus cgr-mir-132 precursor miRNA

Sequence

6447 reads, 90 reads per million, 6 experiments

uccagggcaACCGUGGCUUUCGAUUGUUACUgugggaaccggaggUAACAGUCUACAGCCAUGGUCGccccgcagca
....((((.(((((((((...((((((((((.(((...)))..))))))))))...))))))))).)))).......

Structure

---ucca    a         UUC          -g   g 
       gggc ACCGUGGCU   GAUUGUUACU  ugg  
       |||| |||||||||   ||||||||||  ||| a
       cccG UGGUACCGA   CUGACAAUgg  gcc  
acgacgc    C         CAU          ag   a 

Annotation confidence Not enough data

Genome context

JH000768.1: 800228-800304 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-132

Mature cgr-miR-132-5p

• Accession: MIMAT0023758
• Description: Cricetulus griseus cgr-miR-132-5p mature miRNA
• Sequence: 10 - ACCGUGGCUUUCGAUUGUUACU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-132-3p

• Accession: MIMAT0023759
• Description: Cricetulus griseus cgr-miR-132-3p mature miRNA
• Sequence: 46 - UAACAGUCUACAGCCAUGGUCG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75