Stem-loop cgr-mir-15b

Accession

MI0020417

Description

Cricetulus griseus cgr-mir-15b precursor miRNA

Literature search

1 open access papers mention cgr-mir-15b
(4 sentences)

Sequence

41038 reads, 570 reads per million, 6 experiments

aaaguacuaUAGCAGCACAUCAUGGUUUACAuacuauagucaagaugCGAAUCAUUAUUUGCUGCUCUagaaauuuaa
......(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))........

Structure

--aaagua   U       C  C       A   a  au 
        cua AGCAGCA AU AUGGUUU CAu cu  a
        ||| ||||||| || ||||||| ||| ||  g
        gaU UCGUCGU UA UACUAAG gua ga  u
aauuuaaa   C       U  U       C   -  ac 

Annotation confidence High

Genome context

JH001756.1: 252840-252917 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-15b

Mature cgr-miR-15b-5p

• Accession: MIMAT0023791
• Description: Cricetulus griseus cgr-miR-15b-5p mature miRNA
• Sequence: 10 - UAGCAGCACAUCAUGGUUUACA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-15b-3p

• Accession: MIMAT0023792
• Description: Cricetulus griseus cgr-miR-15b-3p mature miRNA
• Sequence: 48 - CGAAUCAUUAUUUGCUGCUCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75