Stem-loop cgr-let-7a-1

Accession

MI0020368

Description

Cricetulus griseus cgr-let-7a-1 precursor miRNA

Sequence

12406617 reads, 34437.0 reads per million, 55 experiments

cacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccaccacugggagauaaCUAUACAAUCUACUGUCUUUCcuaaggugauggaaaagu
((((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))))..........

Structure

----------    g     U                     uuagg   aca    c 
          cacu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
          |||| ||||| |||||||||||||||||||||     |||   ||||  
          gugg aucCU UUCUGUCAUCUAACAUAUCaa     uag   gggu a
ugaaaaggua    a     -                     -----   --a    c 

Annotation confidence High

Genome context

JH000030.1: 3831224-3831323 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-let-7a-1

Mature cgr-let-7a-1-5p

• Accession: MIMAT0023716
• Description: Cricetulus griseus cgr-let-7a-1-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-let-7a-1-3p

• Accession: MIMAT0052425
• Description: Cricetulus griseus cgr-let-7a-1-3p mature miRNA
• Sequence: 62 - CUAUACAAUCUACUGUCUUUC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75