Stem-loop cgr-mir-29c

Accession

MI0020480

Description

Cricetulus griseus cgr-mir-29c precursor miRNA

Sequence

3214 reads, 45 reads per million, 6 experiments

cacaggcugACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUaugauguagg
.(((...(((((((((((...(((((((.(((...........))))))))))...)))))))))))...)))...

Structure

--c   ggc           UCC       C   gucu 
   aca   ugACCGAUUUC   UGGUGUU AGA    g
   |||   |||||||||||   ||||||| |||    u
   ugu   aUUGGCUAAAG   ACCACGA Ucu    u
gga   agu           UUU       -   guuu 

Annotation confidence Low

Genome context

JH002029.1: 103082-103157 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-29c

Mature cgr-miR-29c-5p

• Accession: MIMAT0023887
• Description: Cricetulus griseus cgr-miR-29c-5p mature miRNA
• Sequence: 10 - ACCGAUUUCUCCUGGUGUUCAGA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-29c-3p

• Accession: MIMAT0023888
• Description: Cricetulus griseus cgr-miR-29c-3p mature miRNA
• Sequence: 46 - UAGCACCAUUUGAAAUCGGUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75