Stem-loop cgr-mir-23a

Accession

MI0020466

Description

Cricetulus griseus cgr-mir-23a precursor miRNA

Literature search

1 open access papers mention cgr-mir-23a
(4 sentences)

Sequence

77451 reads, 1072 reads per million, 6 experiments

uuggccggcuGGGGUUCCUGGGGAUGGGAUUUgaugccagucacaaAUCACAUUGCCAGGGAUUUCCaacugaccu
..((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).

Structure

uu  c   c     -       G    G      a  c 
  gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
  || ||| ||||| ||||||| |||| |||||| || a
  cc guc aCCUU AGGGACC UUAC CUAaac ac g
-u  a   a     U       G    A      -  u 

Annotation confidence Low

Genome context

JH000286.1: 1079003-1079078 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cgr-mir-23a

Mature cgr-miR-23a-5p

• Accession: MIMAT0023862
• Description: Cricetulus griseus cgr-miR-23a-5p mature miRNA
• Sequence: 11 - GGGGUUCCUGGGGAUGGGAUUU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-23a-3p

• Accession: MIMAT0023863
• Description: Cricetulus griseus cgr-miR-23a-3p mature miRNA
• Sequence: 47 - AUCACAUUGCCAGGGAUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75