Stem-loop cgr-mir-34a

Accession

MI0020505

Description

Cricetulus griseus cgr-mir-34a precursor miRNA

Literature search

8 open access papers mention cgr-mir-34a
(18 sentences)

Sequence

38144 reads, 92.0 reads per million, 51 experiments

agugcuucuuUGGCAGUGUCUUAGCUGGUUGUugugaguaauagcgaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcug
(((((((((..(((((((((((.((((((((((....((....))......))))))))))))).))))))))..))))))))).

Structure

-         uU        -   A          --guga  a 
 agugcuucu  GGCAGUGU CUU GCUGGUUGUu      gu a
 |||||||||  |||||||| ||| ||||||||||      ||  
 ucgugaagA  CCGUCAUA GAA CGACUAAcga      cg u
g         UC        U   -          aggaag  a 

Annotation confidence High

Genome context

JH007589.1: 3416-3500 [-]

Mature cgr-miR-34a-5p

• Accession: MIMAT0023926
• Description: Cricetulus griseus cgr-miR-34a-5p mature miRNA
• Sequence: 11 - UGGCAGUGUCUUAGCUGGUUGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-34a-3p

• Accession: MIMAT0052467
• Description: Cricetulus griseus cgr-miR-34a-3p mature miRNA
• Sequence: 55 - AAUCAGCAAGUAUACUGCCCUA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75