Stem-loop cgr-mir-19b

Accession

MI0020451

Description

Cricetulus griseus cgr-mir-19b precursor miRNA

Literature search

1 open access papers mention cgr-mir-19b
(2 sentences)

Sequence

17361 reads, 253 reads per million, 6 experiments

gucuaugguuAGUUUUGCAGGUUUGCAUCCAGCuguauaauacucugcUGUGCAAAUCCAUGCAAAACUGAcuguggugg
..(((((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))))))...

Structure

-gu                 -  -      UC    uguau 
   cuaugguuAGUUUUGCA GG UUUGCA  CAGC     a
   ||||||||||||||||| || ||||||  ||||     a
   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
ggu                 A  U      --    ucuca 

Annotation confidence Not enough data

Genome context

JH001979.1: 109073-109152 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cgr-mir-19b

Mature cgr-miR-19b-5p

• Accession: MIMAT0023840
• Description: Cricetulus griseus cgr-miR-19b-5p mature miRNA
• Sequence: 11 - AGUUUUGCAGGUUUGCAUCCAGC - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-19b-3p

• Accession: MIMAT0023841
• Description: Cricetulus griseus cgr-miR-19b-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCCAUGCAAAACUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75