Stem-loop cgr-mir-194-1

Accession

MI0020440

Description

Cricetulus griseus cgr-mir-194-1 precursor miRNA

Literature search

1 open access papers mention cgr-mir-194-1
(1 sentences)

Sequence

59398 reads, 249.0 reads per million, 55 experiments

gucaucacaUGUAACAGCAACUCCAUGUGGAcugugggcugacuuCCAGUGGAGGUGCUGUUACUCUUGauggccaccaa
(((((((...(((((((((.((((((.((((..((......)).)))))))))).)))))))))...)))))))......

Structure

------       caU         A      G    cu  gg 
      gucauca   GUAACAGCA CUCCAU UGGA  gu  g
      |||||||   ||||||||| |||||| ||||  ||   
      cgguaGU   CAUUGUCGU GAGGUG ACCu  ca  c
aaccac       UCU         G      -    -u  gu 

Annotation confidence High

Genome context

JH000002.1: 3326794-3326873 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-194-1

Mature cgr-miR-194-5p

• Accession: MIMAT0023827
• Description: Cricetulus griseus cgr-miR-194-5p mature miRNA
• Sequence: 10 - UGUAACAGCAACUCCAUGUGGA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-194-3p

• Accession: MIMAT0052442
• Description: Cricetulus griseus cgr-miR-194-3p mature miRNA
• Sequence: 46 - CCAGUGGAGGUGCUGUUACUCUUG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75