Stem-loop cgr-mir-30c-2

Accession

MI0020486

Description

Cricetulus griseus cgr-mir-30c-2 precursor miRNA

Literature search

2 open access papers mention cgr-mir-30c-2
(4 sentences)

Sequence

498896 reads, 2178.0 reads per million, 55 experiments

ugacagauacUGUAAACAUCCUACACUCUCAGCUgugaaaaguaagaaagCUGGGAGAAGGCUGUUUACUCUcucugcc
...((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....))))..

Structure

uga    uacU       U   ACA         gugaaa 
   caga    GUAAACA CCU   CUCUCAGCU      a
   ||||    ||||||| |||   |||||||||       
   gucu    CAUUUGU GGA   GAGGGUCga      g
-cc    cUCU       C   --A         aagaau 

Annotation confidence High

Genome context

JH000029.1: 3475422-3475500 [-]

Mature cgr-miR-30c-5p

• Accession: MIMAT0052503
• Description: Cricetulus griseus cgr-miR-30c-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUACACUCUCAGCU - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-30c-2-3p

• Accession: MIMAT0052458
• Description: Cricetulus griseus cgr-miR-30c-2-3p mature miRNA
• Sequence: 51 - CUGGGAGAAGGCUGUUUACUCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75