Stem-loop cgr-mir-598

Accession

MI0020542

Description

Cricetulus griseus cgr-mir-598 precursor miRNA

Sequence

9380 reads, 52.0 reads per million, 55 experiments

gcugaugcugGCGGUGAUGCCGAUGGUGCGAGCUGaaaaugggcugcUACGUCAUCGUCGUCAUCGUUAUCaucaucauc
(.(((((.(((((((((((.(((((((((.((((.......)))))).))..))))).))))))))))).))))).)...

Structure

--- c     c           C     --  -  G    Ga 
   g ugaug ugGCGGUGAUG CGAUG  GU GC AGCU  a
   | ||||| ||||||||||| |||||  || || ||||  a
   c acuaC AUUGCUACUGC GCUAC  CA cg ucgg  a
cua u     U           U     UG  U  -    gu 

Annotation confidence High

Genome context

JH000094.1: 1622996-1623075 [-]

Mature cgr-miR-598-5p

• Accession: MIMAT0052479
• Description: Cricetulus griseus cgr-miR-598-5p mature miRNA
• Sequence: 11 - GCGGUGAUGCCGAUGGUGCGAGCUG - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-598-3p

• Accession: MIMAT0023986
• Description: Cricetulus griseus cgr-miR-598-3p mature miRNA
• Sequence: 48 - UACGUCAUCGUCGUCAUCGUUAUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75