miRBase entry: cgr-mir-200b

Stem-loop cgr-mir-200b


Accession
MI0020452
Description
Cricetulus griseus cgr-mir-200b precursor miRNA


Sequence

4342 reads, 65 reads per million, 6 experiments
uccaacuugggcagccguggccaucuuacugggcagcauuggauagugucugaucucUAAUACUGCCUGGUAAUGAUGACggcggagccc
........((((..((((.(.(((((((((((((((.((((((.(........).)))))).))))))))))).)))).).)))).))))

Structure
uccaacuu    ag    g c    -           c      u gug 
        gggc  ccgu g cauc uuacugggcag auugga a   u
        ||||  |||| | |||| ||||||||||| |||||| |    
        cccg  ggcg C GUAG AAUGGUCCGUC UAAUcu u   c
--------    -a    g A    U           A      c agu 


Annotation confidence Low
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Genome context
JH001219.1: 151410-151499 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-200b

Accession MIMAT0023842
Description Cricetulus griseus cgr-miR-200b mature miRNA
Sequence 58 - UAAUACUGCCUGGUAAUGAUGAC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75