Stem-loop cgr-mir-200b

Accession

MI0020452

Description

Cricetulus griseus cgr-mir-200b precursor miRNA

Literature search

2 open access papers mention cgr-mir-200b
(4 sentences)

Sequence

1261750 reads, 4293.0 reads per million, 42 experiments

uccaacuugggcagccguggcCAUCUUACUGGGCAGCAUUGGAuagugucugaucucUAAUACUGCCUGGUAAUGAUGACggcggagccc
........((((..((((.(.(((((((((((((((.((((((.(........).)))))).))))))))))).)))).).)))).))))

Structure

uccaacuu    ag    g c    -           C      u gug 
        gggc  ccgu g CAUC UUACUGGGCAG AUUGGA a   u
        ||||  |||| | |||| ||||||||||| |||||| |    
        cccg  ggcg C GUAG AAUGGUCCGUC UAAUcu u   c
--------    -a    g A    U           A      c agu 

Annotation confidence High

Genome context

JH001219.1: 151410-151499 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-200b

Mature cgr-miR-200b-5p

• Accession: MIMAT0052450
• Description: Cricetulus griseus cgr-miR-200b-5p mature miRNA
• Sequence: 22 - CAUCUUACUGGGCAGCAUUGGA - 43
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-200b-3p

• Accession: MIMAT0023842
• Description: Cricetulus griseus cgr-miR-200b-3p mature miRNA
• Sequence: 58 - UAAUACUGCCUGGUAAUGAUGAC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75