Stem-loop cgr-let-7c-1

Accession

MI0020370

Description

Cricetulus griseus cgr-let-7c-1 precursor miRNA

Sequence

14175974 reads, 38911.0 reads per million, 55 experiments

ggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcac
(((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).))).)))........

Structure

--------   uU   G   U             ua  g ua  c 
        ggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
        |||  ||| ||| |||||||||||||  || |  || c
        uCC  UUC AUC UCCAACAUGUCaa  uu a  gu  
cacgaggu   -U   G   U             --  g gg  c 

Annotation confidence High

Genome context

JH000146.1: 136597-136676 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-let-7c-1

Mature cgr-let-7c-1-5p

• Accession: MIMAT0052427
• Description: Cricetulus griseus cgr-let-7c-1-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGGUUGUAUGGUU - 26
• Evidence: experimental ; Illumina [1]

Mature cgr-let-7c-1-3p

• Accession: MIMAT0023718
• Description: Cricetulus griseus cgr-let-7c-1-3p mature miRNA
• Sequence: 50 - CUGUACAACCUUCUAGCUUUCC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75