Stem-loop cgr-mir-93

Accession

MI0020562

Description

Cricetulus griseus cgr-mir-93 precursor miRNA

Literature search

1 open access papers mention cgr-mir-93
(1 sentences)

Sequence

548303 reads, 7618 reads per million, 6 experiments

augggggcucCAAAGUGCUGUUCGUGCAGGUAGuguaauuaccugaccuACUGCUGAGCUAGCACUUCCCGAgcccccagg
.(((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...)))))))))..

Structure

-a         -CA       -     U    G   u  aau 
  ugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
  |||||||||   ||||||| ||||| |||| ||| ||   a
  acccccgAG   UUCACGA CGAGU CGUC Auc ca   c
gg         CCC       U     -    -   -  guc 

Annotation confidence High

Genome context

JH001296.1: 178880-178960 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-93

Mature cgr-miR-93-5p

• Accession: MIMAT0024013
• Description: Cricetulus griseus cgr-miR-93-5p mature miRNA
• Sequence: 11 - CAAAGUGCUGUUCGUGCAGGUAG - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-93-3p

• Accession: MIMAT0024014
• Description: Cricetulus griseus cgr-miR-93-3p mature miRNA
• Sequence: 50 - ACUGCUGAGCUAGCACUUCCCGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75