Stem-loop ptr-mir-107

Accession

MI0002755

Description

Pan troglodytes ptr-mir-107 precursor miRNA

Literature search

7 open access papers mention ptr-mir-107
(39 sentences)

Sequence

1464693 reads, 12511.0 reads per million, 24 experiments

cucucugcuuucAGCUUCUUUACAGUGUUGCCUUGUggcauggaguucaAGCAGCAUUGUACAGGGCUAUcaaagcacaga
.(((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure

c   c      --c    U  U           C   U   a 
 ucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaa   UCGG GA AUGUUACGACG Aac uug g
-   c      cUA    -  C           -   -   a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr10: 90829406-90829486 [-]

Mature ptr-miR-107-5p

• Accession: MIMAT0052222
• Description: Pan troglodytes ptr-miR-107-5p mature miRNA
• Sequence: 13 - AGCUUCUUUACAGUGUUGCCUUGU - 36
• Evidence: not_experimental

Mature ptr-miR-107-3p

• Accession: MIMAT0002459
• Description: Pan troglodytes ptr-miR-107-3p mature miRNA
• Sequence: 50 - AGCAGCAUUGUACAGGGCUAU - 70
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24