Stem-loop chi-mir-107

Accession

MI0030595

Description

Capra hircus chi-mir-107 precursor miRNA

Literature search

53 open access papers mention chi-mir-107
(188 sentences)

Sequence

279844 reads, 859.0 reads per million, 36 experiments

uucucucugcuuucAGCUUCUUUACAGUGUUGCCUUGUggcauggaguucaAGCAGCAUUGUACAGGGCUAUcaaagcacagagagc
((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))).

Structure

-      c      --c    U  U           C   U   a 
 uucucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaa   UCGG GA AUGUUACGACG Aac uug g
c      c      cUA    -  C           -   -   a 

Annotation confidence High

Genome context

chr26: 11322796-11322882 [-]

Mature chi-miR-107-5p

• Accession: MIMAT0058933
• Description: Capra hircus chi-miR-107-5p mature miRNA
• Sequence: 15 - AGCUUCUUUACAGUGUUGCCUUGU - 38
• Evidence: experimental ; Illumina [1]

Mature chi-miR-107-3p

• Accession: MIMAT0035910
• Description: Capra hircus chi-miR-107-3p mature miRNA
• Sequence: 52 - AGCAGCAUUGUACAGGGCUAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40