Stem-loop dre-mir-214

Accession

MI0001381

Description

Danio rerio dre-mir-214 precursor miRNA mir-214

Gene
family

RF00660; mir-214

Literature search

74 open access papers mention dre-mir-214
(571 sentences)

Sequence

893361 reads, 1543.0 reads per million, 288 experiments

ugacugagagcguugucugucUGCCUGUCUACACUUGCUGUGCagaacuuccugcaccugUACAGCAGGCACAGACAGGCAGacagauggcagcccgccu
.......(.(((((((((((((((((((((...((((((((((((............))))))))))))...))))))))))))))))))).)).)....

Structure

ugacuga a  -                   ACA            aacuu 
       g gc guugucugucUGCCUGUCU   CUUGCUGUGCag     c
       | || |||||||||||||||||||   ||||||||||||      
       c cg cgguagacaGACGGACAGA   GGACGACAUguc     c
---uccg c  a                   CAC            cacgu 

Annotation confidence High

Genome context

chr20: 14877639-14877738 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-214

Mature dre-miR-214-5p

• Accession: MIMAT0060859
• Description: Danio rerio dre-miR-214-5p mature miRNA
• Sequence: 22 - UGCCUGUCUACACUUGCUGUGC - 43
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-214-3p

• Accession: MIMAT0001283
• Description: Danio rerio dre-miR-214-3p mature miRNA
• Sequence: 61 - UACAGCAGGCACAGACAGGCAG - 82
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293