Stem-loop dre-mir-196a-1

Accession

MI0001372

Description

Danio rerio dre-mir-196a-1 precursor miRNA

Literature search

10 open access papers mention dre-mir-196a-1
(91 sentences)

Sequence

359720 reads, 416.0 reads per million, 247 experiments

cgcgcggcuggugcgugguuUAGGUAGUUUCAUGUUGUUGGgauuggcuuccuggcuCGACAACAAGAAACUGCCUUGAuuacgucaguucgucuucaucaagggc
.(((.(((((..((((((((.((((((((((.((((((((((...((...))...)))))))))).)))))))))).)))))))))))))))).............

Structure

------------c   c     gu        U          A          auu  c 
             gcg ggcug  gcgugguu AGGUAGUUUC UGUUGUUGGg   gg  
             ||| |||||  |||||||| |||||||||| ||||||||||   || u
             ugc uugac  ugcauuAG UCCGUCAAAG ACAACAGCuc   cc  
cgggaacuacuuc   -     --        U          A          ggu  u 

Annotation confidence High

Genome context

chr23: 36088091-36088196 [+]

Mature dre-miR-196a-5p

• Accession: MIMAT0001276
• Description: Danio rerio dre-miR-196a-5p mature miRNA
• Sequence: 21 - UAGGUAGUUUCAUGUUGUUGG - 41
• Evidence: experimental ; cloned [1]

Mature dre-miR-196a-1-3p

• Accession: MIMAT0060858
• Description: Danio rerio dre-miR-196a-1-3p mature miRNA
• Sequence: 58 - CGACAACAAGAAACUGCCUUGA - 79
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293