Stem-loop dre-mir-219-2

Accession

MI0001385

Description

Danio rerio dre-mir-219-2 precursor miRNA mir-219

Gene
family

RF00251; mir-219

Literature search

9 open access papers mention dre-mir-219-2
(29 sentences)

Sequence

429698 reads, 522.0 reads per million, 236 experiments

UGAUUGUCCAAACGCAAUUCUUGUGaaaugucgagcgaucagucgAGAAUUGUGCCUGGACAUCUGUUGcuggaggcucc
.(((.(((((..(((((((((((......(((....)))....)))))))))))..))))))))....(((...)))...

Structure

---------------U   U     AA           UGaaau   g 
                GAU GUCCA  CGCAAUUCUUG      guc a
                ||| |||||  |||||||||||      |||  
                CUA CAGGU  GUGUUAAGAgc      uag g
ccucggaggucGUUGU   -     CC           --ugac   c 

Annotation confidence High

Genome context

chr5: 65101371-65101450 [+]

Mature dre-miR-219-2-5p

• Accession: MIMAT0001286
• Description: Danio rerio dre-miR-219-2-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUGUG - 25
• Evidence: experimental ; cloned [1]

Mature dre-miR-219-3p

• Accession: MIMAT0031989
• Description: Danio rerio dre-miR-219-3p mature miRNA
• Sequence: 46 - AGAAUUGUGCCUGGACAUCUGUUG - 69
• Evidence: not_experimental

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293