Search results

mir-219 family in Rfam (RF00251)

Summary
miR-219 was predicted in vertebrates by conservation between human, mouse and Fugu and cloned in Fugu [1], and later predicted and experimentally confirmed in Drosophila [2]. miR-219 homologs have since been predicted or experimentally confirmed in a wide range of species which include the platyhelminth Schmidtea mediterranea, several arthropod species and a wide range of vertebrates (MIPF:MIPF0000044). The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequence is excised from the 5' arm of the hairpin. Family represents the microRNA (miRNA) precursor mir-219 imported from miRBase [3].
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5'

There are 93 hairpins in the mir-219 family

Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-219a-1 MI0000296 64 chr6 33207835 33207944 + High
dme-mir-219 MI0000358 256 chr3L 17315006 17315105 + High
mmu-mir-219a-1 MI0000702 359 chr17 34024983 34025092 - High
hsa-mir-219a-2 MI0000740 3045 chr9 128392618 128392714 - High
mmu-mir-219a-2 MI0000741 997 chr2 29845631 29845727 - High
rno-mir-219a-1 MI0000959 55 chr20 3816158 3816267 - High
rno-mir-219a-2 MI0000960 450 chr3 8407430 8407525 - High
gga-mir-219a MI0001246 687 chr17 5485248 5485332 + High
dps-mir-219 MI0001328 - XR_group6 9338113 9338212 - -
dre-mir-219-1 MI0001384 45 chr10 10329464 10329554 - High
dre-mir-219-2 MI0001385 96 chr5 65101371 65101450 + -
ame-mir-219 MI0001582 - CM000057.5 42977 43078 - -
aga-mir-219 MI0001611 - chr2L 21839672 21839758 - -
dre-mir-219-3 MI0002054 460 chr19 18861739 18861888 - High
mml-mir-219-1 MI0002884 10 chr4 34051822 34051931 + High
ggo-mir-219 MI0002885 - chr6 33867669 33867778 + -
ppy-mir-219-1 MI0002886 - NW_002874576.1 1044940 1045049 + -
fru-mir-219-2 MI0003215 - HE591954.1 87833 87912 - -
tni-mir-219-2 MI0003216 - Un_random 16276630 16276709 + -
fru-mir-219-1 MI0003411 - HE602555.1 3742181 3742253 - -
tni-mir-219-1 MI0003412 - 12 10155044 10155138 - -
xtr-mir-219 MI0004873 - chr8 7839280 7839374 + -
mdo-mir-219-1 MI0005323 702 chr1 454138610 454138700 - High
oan-mir-219 MI0006721 1539 Contig12675 21656 21777 - High
cin-mir-219 MI0007178 1355 7q 5634284 5634385 + High
csa-mir-219 MI0007204 - reftig_67 317190 317291 + -
mml-mir-219-2 MI0007676 1155 chr15 10477833 10477929 + High
cfa-mir-219-1 MI0008007 - chr12 2670928 2670990 + -
cfa-mir-219-2 MI0008150 - chr9 55139107 55139171 + -
ptr-mir-219-1 MI0008584 - chr6 33533148 33533255 + -
ptr-mir-219-2 MI0008585 - chr9 106531883 106531978 - -
tca-mir-219 MI0008919 - ChLG3 5243252 5243329 + -
dan-mir-219 MI0009012 - scaffold_13337 8265349 8265445 + -
der-mir-219 MI0009094 - scaffold_4784 16541320 16541416 - -
dgr-mir-219 MI0009104 - scaffold_15110 13121831 13121926 + -
dmo-mir-219 MI0009192 - scaffold_6680 4316909 4317006 - -
dpe-mir-219 MI0009273 - scaffold_35 387470 387566 + -
dse-mir-219 MI0009386 - scaffold_0 9359479 9359575 + -
dsi-mir-219 MI0009433 - chr3L 16646182 16646278 + -
dvi-mir-219 MI0009546 - scaffold_13049 5991431 5991527 - -
dwi-mir-219 MI0009578 - scf2_1100000004768 2086488 2086584 + -
dya-mir-219 MI0009682 - chr3L 16762590 16762686 - -
bta-mir-219-1 MI0009781 3 chr11 99257286 99257381 - -
cte-mir-219 MI0010099 - KB301066.1 18963 19063 + -
spu-mir-219 MI0010221 - KN915964.1 41740 41840 - -
bfl-mir-219 MI0010527 - GG666666.1 1137875 1137956 + -
dpu-mir-219 MI0012226 - GL732774.1 93576 93676 - -
isc-mir-219 MI0012270 - DS658596 21107 21207 - -
eca-mir-219-1 MI0012846 4 chr20 33649525 33649611 + -
eca-mir-219-2 MI0012923 0 chr25 31667362 31667458 - -
aae-mir-219 MI0013513 475 supercont1.368 610327 610412 + -
tgu-mir-219b MI0013651 - chr17 5454921 5455078 - -
tgu-mir-219a MI0013789 - chr17 5454954 5455025 + -
api-mir-219 MI0013917 - GL350104.1 328254 328337 + -
nvi-mir-219 MI0014751 - chr1 13994355 13994456 + -
ppy-mir-219-2 MI0014869 - chr9 125361031 125361127 - -
sja-mir-219 MI0015295 - CABF01007005.1 4661 4806 - -
gga-mir-219b MI0015382 721 chr17 5485245 5485333 - -
rno-mir-219b MI0015462 9 chr3 8407427 8407526 + High
ngi-mir-219 MI0016632 - None None -
nlo-mir-219 MI0016667 - None None -
hsa-mir-219b MI0017299 21 chr9 128392621 128392708 + High
xbo-mir-219 MI0017688 - None None -
egr-mir-219 MI0017790 - APAU02000015.1 1031605 1031691 - -
emu-mir-219 MI0017814 - contig_62349 2327646 2327732 - -
ssc-mir-219a MI0017990 1 chr7 29752701 29752783 - -
aca-mir-219-1 MI0018825 - GL344072.1 36976 37071 + -
aca-mir-219-2 MI0018826 - GL344404.1 882 970 - -
sko-mir-219 MI0019594 - ACQM01084247.1 297 397 - -
pol-mir-219 MI0022207 - None None -
mdo-mir-219-2 MI0023783 100 chr2 270698645 270698704 + -
ipu-mir-219a-2 MI0024581 - None None -
ipu-mir-219a-1 MI0024582 - None None -
ipu-mir-219b MI0024583 - None None -
mmu-mir-219b MI0024990 9 chr2 29845647 29845711 + -
pmi-mir-219 MI0025115 - None None -
lva-mir-219 MI0025161 - None None -
bta-mir-219-2 MI0025539 13 None None -
bbe-mir-219-1 MI0026223 - None None -
bbe-mir-219-2 MI0026224 - None None -
ssa-mir-219a-1 MI0026620 - None None -
ssa-mir-219a-2 MI0026621 - None None -
ssa-mir-219b-1 MI0026622 - None None -
ssa-mir-219b-2 MI0026623 - None None -
ssa-mir-219c-1 MI0026624 - None None -
ssa-mir-219c-2 MI0026625 - None None -
sma-mir-219 MI0027193 - Chr_1 5023926 5024048 - -
efu-mir-219 MI0028743 - JH977876.1 617749 617830 - -
chi-mir-219 MI0030695 - chr11 101987090 101987180 - -
tch-mir-219 MI0031211 - KB320528.1 317 380 - -
oha-mir-219-1 MI0031422 - AZIM01007581.1 26349 26428 - -
oha-mir-219-2 MI0031423 - AZIM01007730.1 8609 8687 - -
ssc-mir-219b MI0031642 0 chr1 302806853 302806936 - -



Comments or questions? Email mirbase@manchester.ac.uk