Stem-loop tca-mir-219

Accession

MI0008919

Description

Tribolium castaneum tca-mir-219 precursor miRNA

Literature search

1 open access papers mention tca-mir-219
(3 sentences)

Sequence

830 reads, 10.0 reads per million, 24 experiments

uuucaggcccUGAUUGUCCAAACGCAAUUCuuguuugcaauuuuaucaAGGACUGUGUGUGGACAUCAUCgcuugaga
((((((((..((((.(((((.(((((.((((((.............)))))).))))).)))))))))..))))))))

Structure

        cc    U     A     A      uuugc 
uuucaggc  UGAU GUCCA ACGCA UUCuug     a
||||||||  |||| ||||| ||||| ||||||     a
agaguucg  ACUA CAGGU UGUGU AGGAac     u
        CU    -     G     C      uauuu 

Annotation confidence High

Genome context

ref|NC_007418.3|: 5656968-5657045 [+]

Mature tca-miR-219-5p

• Accession: MIMAT0008377
• Description: Tribolium castaneum tca-miR-219-5p mature miRNA
• Sequence: 11 - UGAUUGUCCAAACGCAAUUC - 30
• Evidence: experimental ; SOLID [2]

Mature tca-miR-219-3p

• Accession: MIMAT0019121
• Description: Tribolium castaneum tca-miR-219-3p mature miRNA
• Sequence: 49 - AGGACUGUGUGUGGACAUCAUC - 70
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696