miRBase entry: 20817720

Functional shifts in insect microRNA evolution

PubMed ID 20817720
Authors "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
Journal "Genome Biol Evol
Volume 2
Pages 686-696

There are 217 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
tca-mir-1 MI0008892 None ref|NC_007420.3| 10584663 10584734 - High
tca-mir-2-3 MI0008893 None ref|NC_007418.3| 560819 560901 + High
tca-mir-2-1 MI0008894 None ref|NC_007418.3| 561184 561271 + High
tca-mir-2-2 MI0008895 None ref|NC_007418.3| 561337 561421 + High
tca-let-7 MI0008896 None ref|NC_007421.3| 4363419 4363496 + High
tca-mir-7 MI0008897 None ref|NC_007422.5| 1856514 1856591 + High
tca-mir-8 MI0008898 None ref|NC_007424.3| 8781909 8781981 - High
tca-mir-10 MI0008899 None ref|NC_007417.3| 8460374 8460444 + High
tca-mir-12 MI0008900 None ref|NC_007418.3| 21686047 21686133 - High
tca-mir-13a MI0008901 None ref|NC_007418.3| 560942 561021 + High
tca-mir-13b MI0008902 None ref|NC_007418.3| 561058 561131 + High
tca-mir-14 MI0008903 None ref|NC_007418.3| 2833759 2833845 + High
tca-mir-31 MI0008904 None ref|NC_007422.5| 5938419 5938495 + Medium
tca-mir-33 MI0008905 None ref|NC_007419.2| 8315277 8315378 - High
tca-mir-34 MI0008906 None ref|NC_007422.5| 14503137 14503215 + High
tca-mir-71 MI0008907 None ref|NC_007418.3| 560705 560783 + High
tca-mir-87a MI0008908 None ref|NC_007421.3| 1499336 1499417 + High
tca-mir-92a MI0008909 None ref|NC_007423.3| 3038993 3039070 + High
tca-mir-92b MI0008910 None ref|NC_007423.3| 3039543 3039624 + High
tca-mir-100 MI0008911 None ref|NC_007421.3| 4363285 4363360 + High
tca-mir-124 MI0008912 None ref|NC_007420.3| 13734448 13734526 - High
tca-mir-125 MI0008913 None ref|NC_007421.3| 4363608 4363684 + High
tca-mir-133 MI0008914 None ref|NC_007420.3| 10558214 10558297 - High
tca-mir-137 MI0008915 None ref|NC_007422.5| 3734611 3734687 + High
tca-mir-184 MI0008916 None ref|NC_007422.5| 12944291 12944369 + High
tca-mir-190 MI0008917 None ref|NC_007422.5| 945885 945970 + High
tca-mir-210 MI0008918 None ref|NC_007419.2| 7127331 7127406 - High
tca-mir-219 MI0008919 None ref|NC_007418.3| 5656968 5657045 + High
tca-mir-263b MI0008920 None ref|NC_007418.3| 4855278 4855352 + Medium
tca-mir-275 MI0008921 None ref|NC_007424.3| 11129834 11129904 - High
tca-mir-276 MI0008922 None ref|NC_007418.3| 12483934 12484004 - High
tca-mir-277 MI0008923 None ref|NC_007422.5| 14498462 14498542 + High
tca-mir-279a MI0008924 None ref|NC_007422.5| 8213634 8213698 - High
tca-mir-281 MI0008925 None ref|NC_007422.5| 203919 203985 + High
tca-mir-282 MI0008926 None ref|NC_007422.5| 12681802 12681874 - High
tca-mir-283 MI0008927 None ref|NC_007418.3| 21690379 21690454 - High
tca-mir-305 MI0008928 None ref|NC_007424.3| 11129695 11129769 - High
tca-mir-307 MI0008929 None ref|NC_007423.3| 13556466 13556533 + High
tca-mir-317 MI0008930 None ref|NC_007422.5| 14490222 14490298 + High
tca-mir-927a MI0008931 None ref|NC_007424.3| 12073268 12073335 + High
tca-mir-932 MI0008932 None ref|NC_007420.3| 14056887 14056970 - High
tca-mir-iab-4 MI0008933 None ref|NC_007417.3| 7971996 7972076 - High
tca-mir-929 MI0008934 None ref|NC_007424.3| 8050326 8050428 + Medium
tca-mir-9b MI0008935 None ref|NW_015451510.1| 113100 113268 - High
tca-mir-9a MI0010583 None ref|NC_007416.3| 6011253 6011333 - Medium
tca-bantam MI0010584 None ref|NC_007418.3| 16990352 16990432 + High
tca-mir-970 MI0010585 None ref|NC_007417.3| 10959570 10959660 + High
tca-mir-263a MI0010586 None ref|NC_007420.3| 13500399 13500489 - High
tca-mir-279b MI0010587 None ref|NC_007420.3| 443992 444083 + High
tca-mir-993 MI0010588 None ref|NC_007417.3| 8499382 8499469 - High
tca-mir-965 MI0010589 None ref|NC_007420.3| 8315293 8315396 + High
tca-mir-1000 MI0010591 None ref|NC_007417.3| 3329634 3329733 + High
tca-mir-3802 MI0016256 None ref|NC_007425.3| 6403733 6403851 + -
tca-mir-3803 MI0016257 None ref|NC_007425.3| 1682857 1682941 + -
tca-mir-3804a MI0016258 None ref|NW_015450233.1| 816566 816644 - Medium
tca-mir-3804b MI0016259 None ref|NW_015450233.1| 820407 820507 - Medium
tca-mir-995 MI0016260 None ref|NC_007425.3| 5002363 5002456 + Medium
tca-mir-2765 MI0016261 None ref|NC_007425.3| 4187781 4187906 - High
tca-mir-3805a MI0016262 None ref|NC_007416.3| 6598718 6598813 + High
tca-mir-3806 MI0016263 None ref|NC_007416.3| 6598503 6598648 + High
tca-mir-3807 MI0016264 None ref|NC_007416.3| 6593554 6593652 + High
tca-mir-3808 MI0016265 None ref|NC_007416.3| 6595837 6595948 + High
tca-mir-3809 MI0016266 None ref|NC_007416.3| 6585843 6585935 + High
tca-mir-3810 MI0016267 None ref|NC_007416.3| 6591470 6591571 + High
tca-mir-3811a-2 MI0016268 None ref|NC_007416.3| 6597080 6597176 + High
tca-mir-3812 MI0016269 None ref|NC_007416.3| 6594782 6594901 + High
tca-mir-3813 MI0016270 None ref|NC_007416.3| 6587381 6587473 + Medium
tca-mir-3811a-3 MI0016271 None ref|NC_007416.3| 6597740 6597843 + High
tca-mir-3814 MI0016272 None ref|NC_007416.3| 6587937 6588028 + High
tca-mir-3815 MI0016273 None ref|NC_007416.3| 6593904 6593998 + Medium
tca-mir-3816 MI0016274 None ref|NC_007416.3| 6594912 6595083 + High
tca-mir-3817 MI0016275 None ref|NC_007416.3| 6595414 6595529 + High
tca-mir-3811a-4 MI0016276 None ref|NC_007416.3| 6597415 6597511 + High
tca-mir-3818 MI0016277 None ref|NC_007416.3| 6586616 6586708 + High
tca-mir-3805b MI0016278 None ref|NC_007416.3| 6598080 6598183 + -
tca-mir-3811a-5 MI0016279 None ref|NC_007416.3| 6596758 6596843 + High
tca-mir-3820 MI0016280 None ref|NC_007416.3| 6587607 6587699 + High
tca-mir-3821 MI0016281 None ref|NC_007416.3| 6586297 6586388 + High
tca-mir-3822 MI0016282 None ref|NC_007416.3| 6594321 6594483 + High
tca-mir-3823 MI0016283 None ref|NC_007416.3| 6600475 6600565 + -
tca-mir-3824 MI0016284 None ref|NC_007416.3| 6600278 6600374 + High
tca-mir-3811b MI0016285 None ref|NC_007416.3| 6598310 6598421 + High
tca-mir-3825 MI0016286 None ref|NC_007416.3| 6585989 6586083 + High
tca-mir-3826 MI0016287 None ref|NC_007416.3| 6595128 6595240 + -
tca-mir-3827 MI0016288 None ref|NC_007416.3| 5640284 5640358 - Medium
tca-mir-3811a-1 MI0016289 None ref|NC_007416.3| 6596424 6596520 + High
tca-mir-3828 MI0016290 None ref|NC_007416.3| 6595640 6595740 + High
tca-mir-3829 MI0016291 None ref|NC_007416.3| 6593101 6593190 + High
tca-mir-3830 MI0016292 None ref|NC_007416.3| 6032631 6032709 + -
tca-mir-3831 MI0016293 None ref|NC_007416.3| 7955743 7955833 + -
tca-mir-3832 MI0016294 None ref|NC_007416.3| 3536121 3536221 - High
tca-mir-3833 MI0016295 None ref|NC_007417.3| 3817611 3817700 + Low
tca-mir-iab-8 MI0016296 None ref|NC_007417.3| 7971990 7972083 + Medium
tca-mir-3834 MI0016297 None ref|NC_007417.3| 430410 430473 + Medium
tca-mir-3835 MI0016298 None ref|NC_007417.3| 646263 646350 + Low
tca-mir-3836a MI0016299 None ref|NC_007417.3| 374188 374278 + High
tca-mir-308 MI0016300 None ref|NC_007417.3| 4736984 4737086 - High
tca-mir-3837 MI0016301 None ref|NC_007417.3| 1012659 1012767 + -
tca-mir-3836b MI0016302 None ref|NC_007417.3| 1150375 1150465 + High
tca-mir-2796 MI0016303 None ref|NC_007417.3| 14710989 14711146 - High
tca-mir-9c MI0016304 None ref|NC_007418.3| 15689793 15689899 + High
tca-mir-316 MI0016305 None ref|NC_007418.3| 998656 998744 + High
tca-mir-2944a MI0016306 None ref|NC_007418.3| 15689921 15690009 + High
tca-mir-3838 MI0016307 None ref|NC_007418.3| 15547861 15548001 + Low
tca-mir-3839 MI0016308 None ref|NC_007418.3| 6171577 6171678 + -
tca-mir-3840 MI0016309 None ref|NC_007418.3| 15689680 15689770 + High
tca-mir-3841 MI0016310 None ref|NC_007418.3| 15689557 15689651 + High
tca-mir-3842 MI0016311 None ref|NC_007418.3| 559276 559371 + High
tca-mir-279c MI0016312 None ref|NC_007418.3| 15690042 15690153 + High
tca-mir-3843 MI0016313 None ref|NC_007418.3| 15690153 15690244 + High
tca-mir-3844 MI0016314 None ref|NC_007418.3| 6042488 6042574 - Low
tca-mir-3477 MI0016315 None ref|NC_007418.3| 21686264 21686364 - High
tca-mir-3845 MI0016316 None ref|NC_007418.3| 18183022 18183168 + -
tca-mir-3846 MI0016317 None ref|NC_007418.3| 16145945 16146075 - Medium
tca-mir-3847 MI0016318 None ref|NC_007418.3| 1615665 1615761 - -
tca-mir-3848 MI0016319 None ref|NC_007418.3| 7344809 7344893 - -
tca-mir-2944b MI0016320 None ref|NC_007420.3| 7455818 7455919 + High
tca-mir-9d MI0016321 None ref|NC_007420.3| 7455709 7455801 + High
tca-mir-309a MI0016322 None ref|NC_007420.3| 7455942 7456029 + High
tca-mir-3849 MI0016323 None ref|NC_007420.3| 5505629 5505725 + High
tca-mir-3850 MI0016324 None ref|NC_007420.3| 14855286 14855441 - -
tca-mir-3851b MI0016325 None ref|NC_007420.3| 505869 505976 + High
tca-mir-3851a-1 MI0016326 None ref|NC_007420.3| 505472 505579 + High
tca-mir-3852 MI0016327 None ref|NC_007420.3| 15329710 15329803 - -
tca-mir-3853 MI0016328 None ref|NC_007420.3| 5943296 5943410 - Medium
tca-mir-3854 MI0016329 None ref|NC_007420.3| 2588093 2588162 - Medium
tca-mir-3851a-2 MI0016330 None ref|NC_007420.3| 48564 48671 - High
tca-mir-3855 MI0016331 None ref|NC_007421.3| 9780971 9781042 + Medium
tca-mir-87b MI0016332 None ref|NC_007421.3| 1502194 1502291 + High
tca-mir-3856 MI0016333 None ref|NC_007421.3| 2645200 2645282 - -
tca-mir-3851c MI0016334 None ref|NC_007421.3| 9853496 9853606 + High
tca-mir-3857 MI0016335 None ref|NC_007421.3| 9208662 9208764 + Medium
tca-mir-3049 MI0016336 None ref|NC_007421.3| 4828725 4828895 + High
tca-mir-3851d-1 MI0016337 None ref|NC_007421.3| 9847253 9847343 - High
tca-mir-3851e MI0016338 None ref|NC_007421.3| 9958124 9958218 - High
tca-mir-3858 MI0016339 None ref|NC_007421.3| 9956857 9956925 - High
tca-mir-3851f MI0016340 None ref|NC_007421.3| 9957052 9957146 - High
tca-mir-92c MI0016341 None ref|NC_007422.5| 1817521 1817648 + High
tca-mir-279d MI0016342 None ref|NC_007422.5| 8213463 8213604 - High
tca-mir-3859 MI0016343 None ref|NC_007422.5| 9860674 9860742 + Medium
tca-mir-3860 MI0016344 None ref|NC_007422.5| 237650 237715 + Medium
tca-mir-375 MI0016345 None ref|NC_007423.3| 13678586 13678659 - High
tca-mir-3861 MI0016346 None ref|NC_007423.3| 4947159 4947266 - High
tca-mir-2788 MI0016347 None ref|NC_007423.3| 5228613 5228708 - High
tca-mir-3862 MI0016348 None ref|NC_007424.3| 14275660 14275749 + High
tca-mir-29 MI0016349 None ref|NC_007424.3| 3035821 3035950 + High
tca-mir-252a MI0016350 None ref|NC_007424.3| 7058357 7058443 + Medium
tca-mir-252b MI0016351 None ref|NC_007424.3| 7050442 7050535 + High
tca-mir-3863 MI0016352 None ref|NC_007424.3| 14275766 14275858 + High
tca-mir-2944c MI0016353 None ref|NC_007424.3| 10955 11064 - High
tca-mir-3864 MI0016354 None ref|NC_007424.3| 9376996 9377074 - High
tca-mir-3865 MI0016355 None ref|NC_007424.3| 14999211 14999310 - -
tca-mir-279e MI0016356 None ref|NC_007424.3| 11200 11294 - High
tca-mir-1175 MI0016357 None ref|NC_007419.2| 9452383 9452487 + High
tca-mir-750 MI0016358 None ref|NC_007419.2| 9452237 9452328 + High
tca-mir-989 MI0016359 None ref|NC_007419.2| 352039 352130 - High
tca-mir-3866 MI0016360 None ref|NC_007419.2| 717912 718000 - -
tca-mir-3867 MI0016361 None ref|NC_007418.3| 1215823 1215914 + -
tca-mir-3868 MI0016362 None ref|NC_007418.3| 22969144 22969250 - -
tca-mir-3869 MI0016363 None ref|NC_007420.3| 14854738 14854809 + High
tca-mir-3870 MI0016364 None ref|NC_007420.3| 10396376 10396455 - -
tca-mir-3871 MI0016365 None ref|NC_007422.5| 2134770 2134846 + -
tca-mir-3872 MI0016366 None ref|NC_007422.5| 15294130 15294222 + Low
tca-mir-3873 MI0016367 None ref|NC_007422.5| 4352112 4352234 - -
tca-mir-3874 MI0016368 None ref|NC_007423.3| 3955903 3956044 - -
tca-mir-3875 MI0016369 None ref|NC_007423.3| 8370253 8370326 - -
tca-mir-3876 MI0016370 None ref|NC_007424.3| 5805652 5805712 + -
tca-mir-3877 MI0016371 None ref|NC_007424.3| 11502019 11502086 - High
tca-mir-3878 MI0016372 None ref|NC_007419.2| 7173199 7173287 + -
tca-mir-3879 MI0016373 None ref|NC_007419.2| 4184578 4184646 - -
tca-mir-998 MI0016374 None ref|NC_007420.3| 7197684 7197779 + High
tca-mir-11 MI0016375 None ref|NC_007420.3| 7197493 7197598 + High
tca-mir-3880 MI0016376 None ref|NW_015450733.1| 46024 46127 - Low
tca-mir-3881 MI0016377 None ref|NW_015451025.1| 124011 124097 - Medium
tca-mir-3882 MI0016378 None ref|NW_015451896.1| 14499 14583 - Medium
tca-mir-3883 MI0016379 None ref|NW_015451597.1| 8918 8988 + -
tca-mir-980 MI0016380 None ref|NW_015450942.1| 1409 1503 + High
tca-mir-3884 MI0016381 None ref|NW_015451001.1| 1844 1909 + Low
tca-mir-3885 MI0016382 None ref|NC_007425.3| 4597005 4597096 - -
tca-mir-3886 MI0016383 None ref|NC_007416.3| 4333716 4333799 - -
tca-mir-3887 MI0016384 None ref|NC_007416.3| 7315069 7315150 - -
tca-mir-3888 MI0016385 None ref|NC_007417.3| 12312089 12312209 + -
tca-mir-3889 MI0016386 None ref|NC_007418.3| 15689422 15689517 + Medium
tca-mir-3890 MI0016387 None ref|NC_007418.3| 16869908 16870045 + -
tca-mir-3891 MI0016388 None ref|NC_007418.3| 3251000 3251091 + -
tca-mir-3791 MI0016389 None ref|NC_007420.3| 7457536 7457620 + High
tca-mir-3892 MI0016390 None ref|NC_007420.3| 15343486 15343560 + -
tca-mir-309b MI0016391 None ref|NC_007420.3| 7457435 7457524 + High
tca-mir-3893 MI0016392 None ref|NC_007420.3| 7457223 7457302 + High
tca-mir-3894 MI0016393 None ref|NC_007422.5| 12296478 12296564 + -
tca-mir-3895 MI0016394 None ref|NC_007423.3| 6276472 6276561 + -
tca-mir-3896 MI0016395 None ref|NC_007423.3| 5293652 5293755 + -
tca-mir-193 MI0016396 None ref|NC_007423.3| 5228743 5228839 - -
tca-mir-3897 MI0016397 None ref|NC_007419.2| 582781 582862 - -
tca-mir-3898 MI0016398 None ref|NC_007417.3| 4464821 4464919 + -
tca-mir-3899 MI0016399 None ref|NC_007418.3| 7118536 7118595 + -
tca-mir-3900 MI0016400 None ref|NC_007418.3| 23514016 23514086 - -
tca-mir-3901 MI0016401 None ref|NC_007424.3| 12861925 12862054 - -
tca-mir-3902 MI0016402 None ref|NC_007425.3| 3118243 3118345 + -
tca-mir-3903 MI0016403 None ref|NC_007416.3| 7775509 7775596 - -
tca-mir-3904 MI0016404 None ref|NC_007418.3| 23284140 23284260 - -
tca-mir-3905 MI0016405 None ref|NC_007424.3| 11775445 11775568 - -
tca-mir-3819 MI0016406 None ref|NC_007419.2| 11174574 11174684 + -
tca-mir-6007 MI0020218 None ref|NC_007416.3| 6591082 6591168 + High
tca-mir-6008 MI0020219 None ref|NC_007417.3| 12174344 12174439 + -
tca-mir-6009 MI0020220 None ref|NC_007417.3| 2892388 2892477 - -
tca-mir-6010 MI0020221 None ref|NC_007417.3| 9483708 9483792 + -
tca-mir-6011 MI0020222 None ref|NC_007418.3| 26127305 26127381 - -
tca-mir-6012 MI0020223 None ref|NC_007418.3| 7388585 7388757 - High
tca-mir-6013 MI0020224 None ref|NC_007419.2| 9818714 9818781 + -
tca-mir-6014 MI0020225 None ref|NC_007419.2| 2799392 2799473 + -
tca-mir-6015 MI0020226 None ref|NC_007419.2| 10180909 10181000 + -
tca-mir-6016 MI0020227 None ref|NC_007422.5| 15267893 15267967 + High
tca-mir-6017 MI0020228 None ref|NC_007422.5| 7544192 7544346 - -
tca-mir-6018 MI0020229 None ref|NC_007423.3| 668042 668134 - -
tca-mir-927b MI0020230 None ref|NC_007424.3| 11684270 11684365 - High
tca-mir-9e MI0020231 None ref|NC_007424.3| 11062 11172 - High



Comments or questions? Email mirbase@gmail.com