Stem-loop tca-mir-3845

Accession

MI0016316

Description

Tribolium castaneum tca-mir-3845 precursor miRNA

Sequence

cgaaauggugauuuauguaauaaaguugguggUCAAUGUCCCACGCCUUGGaguuaucuuggccggauuaagucgaaugcuguguacgccaugguggaaAUAAGUGUUGGGACCCACGCaacguccauagaugggucaaucaguuau
.....(((((((((((.((.....((((((((.....((((((.((((((...(((((.((((.(.....(((.....))).....))))).)))))...)))).)))))))))))).)))).....)).))))))).)))).....

Structure

cgaaa    -       g  auaaa    -    UCAAU      C  -    Gag     u    c gauua   c 
     uggu gauuuau ua     guug gugg     GUCCCA GC CUUG   uuauc uggc g     agu g
     |||| ||||||| ||     |||| ||||     |||||| || ||||   ||||| |||| |     ||| a
     acua cugggua au     caaC CACC     CAGGGU UG GAAU   ggugg accg c     ucg a
uauug    a       g  accug    G    -----      -  U    Aaa     u    - augug   u 

Annotation confidence Not enough data

Genome context

ChLG3: 16474394-16474540 [-]

Mature tca-miR-3845-5p

• Accession: MIMAT0018738
• Description: Tribolium castaneum tca-miR-3845-5p mature miRNA
• Sequence: 33 - UCAAUGUCCCACGCCUUGG - 51
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3845-3p

• Accession: MIMAT0018739
• Description: Tribolium castaneum tca-miR-3845-3p mature miRNA
• Sequence: 100 - AUAAGUGUUGGGACCCACGC - 119
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696