Stem-loop tca-mir-3854

Accession

MI0016329

Description

Tribolium castaneum tca-mir-3854 precursor miRNA

Sequence

511 reads, 14.0 reads per million, 25 experiments

cgacACCACAAUCCCAGCUCCACAuuauugcauuucaaaaauaAUAGUGGCGUUUAGUAUUGUGGAAauu
.....((((((((..(((.((((((((((..........)))))).)))).)))..).))))))).....

Structure

cgacA       - CC   U    -      gcau 
     CCACAAU C  AGC CCAC Auuauu    u
     ||||||| |  ||| |||| ||||||     
     GGUGUUA G  UUG GGUG UAauaa    u
uuaAA       U AU   C    A      aaac 

Annotation confidence Medium

Genome context

ref|NC_007420.3|: 2588093-2588162 [-]

Mature tca-miR-3854-5p

• Accession: MIMAT0018764
• Description: Tribolium castaneum tca-miR-3854-5p mature miRNA
• Sequence: 5 - ACCACAAUCCCAGCUCCACA - 24
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3854-3p

• Accession: MIMAT0018765
• Description: Tribolium castaneum tca-miR-3854-3p mature miRNA
• Sequence: 44 - AUAGUGGCGUUUAGUAUUGUGGAA - 67
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696