Stem-loop tca-mir-100

Accession

MI0008911

Description

Tribolium castaneum tca-mir-100 precursor miRNA

Literature search

12 open access papers mention tca-mir-100
(43 sentences)

Sequence

14505589 reads, 73600.0 reads per million, 34 experiments

auccgguggAACCCGUAGAUCCGAACUUGUGgggcuguggucaCAAGUUCUUGUUUAUGGGUACCuacugguagaa
..(((((((.((((((((((..((((((((((........))))))))))..)))))))))).)).))))).....

Structure

---au     -  A          CC          ggc 
     ccggu gg ACCCGUAGAU  GAACUUGUGg   u
     ||||| || ||||||||||  ||||||||||    
     gguca CC UGGGUAUUUG  CUUGAACacu   g
aagau     u  A          UU          ggu 

Annotation confidence High

Genome context

ref|NC_007421.3|: 4363285-4363360 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-100

Mature tca-miR-100-5p

• Accession: MIMAT0008369
• Description: Tribolium castaneum tca-miR-100-5p mature miRNA
• Sequence: 10 - AACCCGUAGAUCCGAACUUGUG - 31
• Evidence: experimental ; SOLID [2]

Mature tca-miR-100-3p

• Accession: MIMAT0019113
• Description: Tribolium castaneum tca-miR-100-3p mature miRNA
• Sequence: 44 - CAAGUUCUUGUUUAUGGGUACC - 65
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696