Stem-loop tca-mir-308

Accession

MI0016300

Description

Tribolium castaneum tca-mir-308 precursor miRNA

Literature search

1 open access papers mention tca-mir-308
(1 sentences)

Sequence

11575 reads, 315.0 reads per million, 34 experiments

ucaaaugggguaauuggcgcccugCGCAGGAUUUGCUUGUGAAUGGgugugcuugauucAAUCACAGGAAAAUUCUGUGCGgggaguugguuuugucaccaca
.....(((.(.(((((((.(((((((((((((((.(((((((.(((((.......))))).))))))).))))))))))))))).))))))).).))).....

Structure

ucaaa   g u       g               G       A     gu 
     ugg g aauuggc cccugCGCAGGAUUU CUUGUGA UGGgu  g
     ||| | ||||||| ||||||||||||||| ||||||| |||||  c
     acu u uugguug gggGCGUGUCUUAAA GGACACU Acuua  u
acacc   g u       a               A       A     gu 

Annotation confidence High

Genome context

ref|NC_007417.3|: 4736984-4737086 [-]

Mature tca-miR-308-5p

• Accession: MIMAT0018706
• Description: Tribolium castaneum tca-miR-308-5p mature miRNA
• Sequence: 25 - CGCAGGAUUUGCUUGUGAAUGG - 46
• Evidence: experimental ; SOLID [1]

Mature tca-miR-308-3p

• Accession: MIMAT0018707
• Description: Tribolium castaneum tca-miR-308-3p mature miRNA
• Sequence: 60 - AAUCACAGGAAAAUUCUGUGCG - 81
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696