Stem-loop tca-mir-184

Accession

MI0008916

Description

Tribolium castaneum tca-mir-184 precursor miRNA

Literature search

3 open access papers mention tca-mir-184
(5 sentences)

Sequence

3423893 reads, 31593.0 reads per million, 34 experiments

uuuucuuccagucCCUUGUCAUUCUCUCGCCCGGUguauuuuaacaacUGGACGGAGAACUGAUAAGGGCUugugggaa
..(((((.(((.((((((((((((((.((.(((((((......)).))))).))))))).))))))))).))).)))))

Structure

uu     c   u         -     U  C     -  au 
  uucuu cag cCCUUGUCA UUCUC CG CCGGU gu  u
  ||||| ||| ||||||||| ||||| || ||||| ||   
  aaggg guU GGGAAUAGU AAGAG GC GGUca ca  u
--     u   C         C     -  A     a  au 

Annotation confidence High

Genome context

ref|NC_007422.5|: 12944291-12944369 [+]

Mature tca-miR-184-5p

• Accession: MIMAT0019118
• Description: Tribolium castaneum tca-miR-184-5p mature miRNA
• Sequence: 14 - CCUUGUCAUUCUCUCGCCCGGU - 35
• Evidence: experimental ; SOLID [2]

Mature tca-miR-184-3p

• Accession: MIMAT0008374
• Description: Tribolium castaneum tca-miR-184-3p mature miRNA
• Sequence: 49 - UGGACGGAGAACUGAUAAGGGCU - 71
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696